##Statistics Seminar##\\ Department of Mathematical Sciences
^ **DATE:**|Thursday, Nov. 12, 2020 |
^ **TIME:**|1:15pm -- 2:15pm |
^ **LOCATION:**|Zoom meeting |
^ **SPEAKER:**|Xiaoke Qin, Binghamton University |
^ **TITLE:**|Variable selection for sparse Dirichlet-Multinomail regression with an application to microbiome data analysis. |
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**Abstract**
With the development of next generation sequencing technology,
researchers have now been able to study the microbiome composition using
direct sequencing, whose output are bacterial taxa counts for each
microbiomesample. One goal of microbiome study is to associate the
microbiome composition with environmental covariates. This paper
proposes to model the taxa counts using a Dirichlet-multinomial (DM)
regression model in order to account for overdispersion of observed
counts. The DM regression model can be used for testing the association
between taxa composition and covariates using the likelihood ratio test.
However, when the number of covariates is large, multiple testing can
lead to loss of power. To address the high dimensionality of the
problem, a penalized likelihood approach is proposed to estimate the
regression parameters and to select the variables by imposing a sparse
group l_2 penalty to encourage both group-level and within-group
sparsity. Such a variable selection procedure can lead to selection of
the relevant covariates and their associated bacterial taxa. An
efficient block-coordinate descent algorithm is developed to solve the
optimization problem in this paper. The authors also demonstrate the
power of the method in the analysis of a data set evaluating the
nutrient intake on the human gut microbiome.