##Statistics Seminar##\\ Department of Mathematical Sciences
^ **DATE:**|Thursday, Month 24, 2022 |
^ **TIME:**|1:15pm -- 2:15pm |
^ **LOCATION:**|Zoom meeting |
^ **SPEAKER:**|Wenshu Dai, Binghamton University |
^ **TITLE:**|Variational Inference of FMR and FMRC Models for Clustering Microbiome Data |
\\
**Abstract**
Discrete data such as the microbiome taxa count data resulting from 16S
rRNA sequencing are routinely encountered in bioinformatics. Taxa count
data in microbiome studies are typically high-dimensional, overdispersed,
and can only reveal relative abundance, therefore are treated as
compositional. Analyzing these data presents challenges because they are
restricted on a simplex. Additionally, these microbiome taxa counts are
affected by other biological and/or environmental covariates such as age,
gender, diet etc. Here, we develop regression-based mixtures of logistic
normal multinomial models for clustering microbiome data. These models
partition samples into homogeneous subpopulations and allow for
investigation of the relationship between bacterial abundance and
biological and/or environmental covariates within each inferred group. In
this project, we utilize an efficient framework for parameter estimation
using variational Gaussian approximations (VGA). The proposed method is
illustrated on simulated datasets.